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 <title>iMechanica - Simulation of nanoporous material - Comments</title>
 <link>http://imechanica.org/taxonomy/term/1254</link>
 <description>Comments for &quot;Simulation of nanoporous material&quot;</description>
 <language>en</language>
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 <title>Fe-Zn system</title>
 <link>http://imechanica.org/node/1844#comment-7961</link>
 <description>&lt;p&gt;
&lt;font size=&quot;2&quot;&gt;hi Kejie Zhao,&lt;/font&gt;
&lt;/p&gt;
&lt;p&gt;
&lt;font size=&quot;2&quot;&gt;I am working with LAMMPS. My work deals with giving shear to the Zn layer (has got HCP structure) which is coated over Fe(has BCC structure). In the interface the crystal structure is very complex. I dont get the potential function for the Fe-Zn interactions and how to define the lattice at the interface?&amp;nbsp;&lt;/font&gt;
&lt;/p&gt;
&lt;p&gt;
&lt;font size=&quot;2&quot;&gt;&amp;nbsp;&lt;/font&gt;
&lt;/p&gt;
&lt;p&gt;
&lt;font size=&quot;2&quot;&gt;dinesh&amp;nbsp;&lt;/font&gt;
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&lt;br class=&quot;clear&quot; /&gt;</description>
 <pubDate>Mon, 30 Jun 2008 05:51:11 -0400</pubDate>
 <dc:creator>gr.dinesh</dc:creator>
 <guid isPermaLink="false">comment 7961 at http://imechanica.org</guid>
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<item>
 <title>This quality has not been implemented</title>
 <link>http://imechanica.org/node/1844#comment-5108</link>
 <description>&lt;p&gt;
Hi,
&lt;/p&gt;
&lt;p&gt;
The per_atom stress or energy calculation has not been implemented in Lammps, for some many-body potentials including SW, Tersoff and MEAM. You may have to post-process this quality.&amp;nbsp; You can find some similar discusses in &lt;a href=&quot;http://sourceforge.net/mailarchive/forum.php?forum_name=lammps-users&quot;&gt;http://sourceforge.net/mailarchive/forum.php?forum_name=lammps-users&lt;/a&gt;
&lt;/p&gt;
&lt;p&gt;
In my thought, you may&amp;nbsp;need to add&amp;nbsp;yourself stress_calculation_code in lammps according to Virial&amp;#39;s definition to solve this problem. Of cource you can also wait for the new version.&amp;nbsp;
&lt;/p&gt;
&lt;p&gt;
Kejie Zhao
&lt;/p&gt;
&lt;br class=&quot;clear&quot; /&gt;</description>
 <pubDate>Wed, 19 Sep 2007 08:30:28 -0400</pubDate>
 <dc:creator>Kejie Zhao</dc:creator>
 <guid isPermaLink="false">comment 5108 at http://imechanica.org</guid>
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 <title>In LAMMPS, some pair</title>
 <link>http://imechanica.org/node/1844#comment-5107</link>
 <description>&lt;p&gt;
In LAMMPS, some pair potentials such as Tersoff and sw do not allow the calculation of per-atom stres. How to solve the problem? I notice only EAM and Morse potential pair&lt;br /&gt;
style support this caculation. For example, if I want to study Si or&lt;br /&gt;
SiC, is there is any way to output the per-atom stress using LAMMPS.&amp;nbsp; thx.
&lt;/p&gt;
&lt;p&gt;
Tongwei Han
&lt;/p&gt;
&lt;br class=&quot;clear&quot; /&gt;</description>
 <pubDate>Wed, 19 Sep 2007 06:52:52 -0400</pubDate>
 <dc:creator>Tongwei Han</dc:creator>
 <guid isPermaLink="false">comment 5107 at http://imechanica.org</guid>
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<item>
 <title>Hi Sandip</title>
 <link>http://imechanica.org/node/1844#comment-4778</link>
 <description>&lt;p&gt;
Hi Sandip Haldar,
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&lt;p&gt;
&amp;nbsp;&amp;nbsp;Lammps I think is quite powerful in atomistic modeling. It&amp;#39;s an open source software, and you can find its newest version from the URL: &lt;a href=&quot;http://lammps.sandia.gov/&quot;&gt;http://lammps.sandia.gov/&lt;/a&gt;. Besides, the author is very nice, I have got many help from him. I am using ATOMEYE to view atomic configurations, you may download it from &lt;a href=&quot;http://164.107.79.177/Archive/Graphics/A/&quot;&gt;http://164.107.79.177/Archive/Graphics/A/&lt;/a&gt;. If you have any question on these two softwares, feel free to contact with me.
&lt;/p&gt;
&lt;p&gt;
&amp;nbsp;Kejie
&lt;/p&gt;
&lt;br class=&quot;clear&quot; /&gt;</description>
 <pubDate>Wed, 29 Aug 2007 03:19:12 -0400</pubDate>
 <dc:creator>Kejie Zhao</dc:creator>
 <guid isPermaLink="false">comment 4778 at http://imechanica.org</guid>
</item>
<item>
 <title>Hi kejie,


I am also</title>
 <link>http://imechanica.org/node/1844#comment-4777</link>
 <description>&lt;p&gt;
Hi kejie,
&lt;/p&gt;
&lt;p&gt;
I am also learning LAMMPS. It will be very helpful&lt;br /&gt;
for me to discuss few things with you. How did you visualize the&lt;br /&gt;
configerations? 
&lt;/p&gt;
&lt;p&gt;
Sandip Haldar
&lt;/p&gt;
&lt;br class=&quot;clear&quot; /&gt;</description>
 <pubDate>Wed, 29 Aug 2007 02:52:10 -0400</pubDate>
 <dc:creator>Sandip Haldar</dc:creator>
 <guid isPermaLink="false">comment 4777 at http://imechanica.org</guid>
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