biophysics

Daniel C. Suo's picture

Introduction to Systems Biology

How does the cell know when to produce a protein? Why does it produce this protein? How does it produce this protein so accurately, in transcription, timing, and concentration? It is amazing that the cell functions as precisely as it needs to in response to various stimuli. What is more amazing is that the cell's actions are a result of stochastic processes.


Semiflexible polymer chain under sustained tension as a model of cytoskeletal rheology

This is a model of a single semiflexible polymer chain under sustained tension. The model captures two key features of the cytoskeletal rheology: a) the power-law behavior; and b) the dependence of the power-law on mechanical prestress. The model also reveals the underlying mechanisms.


Ashkan Vaziri's picture

Deformation of the cell nucleus under indentation: Mechanics and Mechanisms

Computational models of the cell nucleus, along with experimental observations, can help in understanding the biomechanics of force-induced nuclear deformation and mechanisms of stress transition throughout the nucleus. Here, we develop a computational model for an isolated nucleus undergoing indentation, which includes separate components representing the nucleoplasm and the nuclear envelope. The nuclear envelope itself is composed of three separate layers: two thin elastic layers representing the inner and outer nuclear membranes and one thicker layer representing the nuclear lamina. The proposed model is capable of separating the structural role of major nuclear components in the force-induced biological response of the nucleus (and ultimately the cell). A systematic analysis is carried out to explore the role of major individual nuclear elements, namely inner and outer membranes, nuclear lamina, and nucleoplasm, as well as the loading and experimental factors such as indentation rate and probe angle, on the biomechanical response of an isolated nucleus in atomic force microscopy indentation experiment.


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