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elastic network model

Relationship between disease-specific structures of amyloid fibrils and their mechanical properties

Submitted by Kilho Eom on
research
normal mode analysis
elastic network model
Coarse-Grained Modeling
amyloid fibril
beam model
disease specificity

Relationship between disease-specific structures of amyloid fibrils and their mechanical properties

Gwonchan Yoon, Young Gab Kim, Kilho Eom*, Sungsoo Na*

 

ABSTRACT

Mechanical Characterization of Amyloid Fibrils Using Coarse-Grained Normal Mode Analysis

Submitted by Kilho Eom on
research
normal mode analysis
elastic network model
Elastic properties
amyloid fibril
structure-property relation
shear effect
Timoshenko beam model

Mechanical Characterization of Amyloid Fibrils Using Coarse-Grained Normal Mode Analysis

Gwonchan Yoon, Jinhak Kwak, Jae In Kim, Sungsoo Na, and Kilho Eom

Abstract

Mesoscopic model for mechanical characterization of protein materials

Submitted by Kilho Eom on
research
elastic network model
mesoscopic model
protein crystal
Go potential
mechanical property
structure-property relationship

We consider the mesoscopic model of protein materials composed of protein crystals with given space group for understanding the mechanical properties of protein materials with respect to their structures. This preprint was accepted for publication at Journal of Computational Chemistry.

Review: Coarse-grained model for normal mode analysis of proteins

Submitted by Kilho Eom on
research
Protein dynamics
coarse-graining
normal mode analysis
elastic network model
Go model

The preprint provides the summary and/or review of current state-of-art in coarse-grained modeling of protein structures for normal mode analysis. This review summarizes the quasiharmonic analysis, Go model, elastic network model, and recently suggested coarse-grained models for protein structures.

Abstract 

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